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Data sources

Every source is downloaded from its publisher and checked against a pinned checksum. Generated from atlas_src/recipe.toml.

Automated anatomical labelling atlas 3

Rolls ET, Huang CC, Lin CP, Feng J, Joliot M (2020). Automated anatomical labelling atlas 3. doi:10.1016/j.neuroimage.2019.116189

A high-resolution in vivo magnetic resonance imaging atlas of the human hypothalamic region

Neudorfer C, Germann J, Elias GJB, Gramer R, Boutet A, Lozano AM (2020). A high-resolution in vivo magnetic resonance imaging atlas of the human hypothalamic region. doi:10.1038/s41597-020-00644-6

Pituitary mask on the MNI ICBM152 2009a nonlinear asymmetric template

Local builds only

No licence for sharing yet; the authors have been asked for permission.

Tang K (2024). Pituitary mask on the MNI ICBM152 2009a nonlinear asymmetric template.

A probabilistic atlas of the pineal gland in the standard space

Local builds only

No licence for sharing yet; the authors have been asked for permission.

Razavi F, Raminfard S, Kalantar Hormozi H, Sisakhti M, Batouli SAH (2021). A probabilistic atlas of the pineal gland in the standard space. doi:10.3389/fninf.2021.554229

Harvard Ascending Arousal Network Atlas, version 2.0

Edlow BL, Kinney HC (2023). Harvard Ascending Arousal Network Atlas, version 2.0. doi:10.5061/dryad.zw3r228d2

A probabilistic MR atlas of the human cerebellum (deep nuclei)

Diedrichsen J, Balsters JH, Flavell J, Cussans E, Ramnani N (2009). A probabilistic MR atlas of the human cerebellum (deep nuclei). doi:10.1016/j.neuroimage.2009.01.045

Mapping the human subcortical auditory system using histology, postmortem MRI and in vivo MRI at 7T

Sitek KR, Gulban OF, Calabrese E, Johnson GA, Lage-Castellanos A, Moerel M, Ghosh SS, De Martino F (2019). Mapping the human subcortical auditory system using histology, postmortem MRI and in vivo MRI at 7T. doi:10.7554/eLife.48932

Brainstem Navigator: an atlas of brainstem nuclei in living humans from 7 tesla MRI

Local builds only

No licence for sharing yet; the authors have been asked for permission.

Bianciardi M, Singh K, Garcia-Gomar MG, et al. (2024). Brainstem Navigator: an atlas of brainstem nuclei in living humans from 7 tesla MRI. doi:10.25790/bml0cm.96

  • Licence: Brainstem Navigator License: non-commercial research only, no distribution outside the organisation; local use only until the authors allow sharing
  • Page: https://www.nitrc.org/projects/brainstemnavig
  • Id: bianciardi2024

Population-averaged atlas of the macroscale human structural connectome and its network topology

Yeh FC, Panesar S, Fernandes D, Meola A, Yoshino M, Fernandez-Miranda JC, Vettel JM, Verstynen T (2018). Population-averaged atlas of the macroscale human structural connectome and its network topology. doi:10.1016/j.neuroimage.2018.05.027

Colin 27 Average Brain, Stereotaxic Registration Model

Holmes CJ, Hoge R, Collins L, Woods R, Toga AW, Evans AC (1998). Colin 27 Average Brain, Stereotaxic Registration Model. doi:10.1097/00004728-199803000-00032