Structures

173 structures in 37 groups, generated from atlas_src/structures.toml. marks shapes that appear in local builds only, until their authors allow sharing.

Brain

Forebrain

Telencephalon

Cerebral cortex

	Name	Acronym	Kind	Sides	Source
	Insula	INS	region	left and right	aal3

Frontal lobe

	Name	Acronym	Kind	Sides	Source
	Precentral gyrus	PreCG	region	left and right	aal3
	Superior frontal gyrus, dorsolateral part	SFGdl	region	left and right	aal3
	Middle frontal gyrus	MFG	region	left and right	aal3
	Inferior frontal gyrus, opercular part	IFGoperc	region	left and right	aal3
	Inferior frontal gyrus, triangular part	IFGtriang	region	left and right	aal3
	Inferior frontal gyrus, orbital part	IFGorb	region	left and right	aal3
	Rolandic operculum	ROL	region	left and right	aal3
	Supplementary motor area	SMA	region	left and right	aal3
	Olfactory cortex	OLF	region	left and right	aal3
	Superior frontal gyrus, medial part	SFGmed	region	left and right	aal3
	Superior frontal gyrus, medial orbital part	SFGmorb	region	left and right	aal3
	Gyrus rectus	REC	region	left and right	aal3
	Medial orbital gyrus	MOrG	region	left and right	aal3
	Anterior orbital gyrus	AOrG	region	left and right	aal3
	Posterior orbital gyrus	POrG	region	left and right	aal3
	Lateral orbital gyrus	LOrG	region	left and right	aal3

Parietal lobe

	Name	Acronym	Kind	Sides	Source
	Postcentral gyrus	PoCG	region	left and right	aal3
	Superior parietal gyrus	SPG	region	left and right	aal3
	Inferior parietal gyrus	IPG	region	left and right	aal3
	Supramarginal gyrus	SMG	region	left and right	aal3
	Angular gyrus	ANG	region	left and right	aal3
	Precuneus	PCUN	region	left and right	aal3
	Paracentral lobule	PCL	region	left and right	aal3

Temporal lobe

	Name	Acronym	Kind	Sides	Source
	Fusiform gyrus	FFG	region	left and right	aal3
	Heschl gyrus	HES	region	left and right	aal3
	Superior temporal gyrus	STG	region	left and right	aal3
	Temporal pole, superior part	TPOsup	region	left and right	aal3
	Middle temporal gyrus	MTG	region	left and right	aal3
	Temporal pole, middle part	TPOmid	region	left and right	aal3
	Inferior temporal gyrus	ITG	region	left and right	aal3

Occipital lobe

	Name	Acronym	Kind	Sides	Source
	Calcarine cortex	CAL	region	left and right	aal3
	Cuneus	CUN	region	left and right	aal3
	Lingual gyrus	LING	region	left and right	aal3
	Superior occipital gyrus	SOG	region	left and right	aal3
	Middle occipital gyrus	MOG	region	left and right	aal3
	Inferior occipital gyrus	IOG	region	left and right	aal3

Limbic lobe

	Name	Acronym	Kind	Sides	Source
	Middle cingulate cortex	MCC	region	left and right	aal3
	Posterior cingulate cortex	PCC	region	left and right	aal3
	Hippocampus	HIP	region	left and right	aal3
	Parahippocampal gyrus	PHG	region	left and right	aal3

Anterior cingulate cortex

	Name	Acronym	Kind	Sides	Source
	Subgenual anterior cingulate cortex	sgACC	region	left and right	aal3
	Pregenual anterior cingulate cortex	pgACC	region	left and right	aal3
	Supracallosal anterior cingulate cortex	scACC	region	left and right	aal3

Basal nuclei

	Name	Acronym	Kind	Sides	Source
	Amygdala	AMYG	nucleus	left and right	aal3
	Caudate nucleus	CAU	nucleus	left and right	aal3
	Putamen	PUT	nucleus	left and right	aal3
	Globus pallidus	PAL	nucleus	left and right	aal3
	Nucleus accumbens	NAcc	nucleus	left and right	aal3

Basal forebrain

	Name	Acronym	Kind	Sides	Source
	Nucleus basalis of Meynert	NBM	nucleus	left and right	neudorfer2020
	Diagonal band of Broca	DBB	region	left and right	neudorfer2020
	Bed nucleus of the stria terminalis	BNST	nucleus	left and right	neudorfer2020

Diencephalon

	Name	Acronym	Kind	Sides	Source
	Pituitary gland	PIT	region	midline	tang2024

Thalamus

	Name	Acronym	Kind	Sides	Source
	Anteroventral nucleus	AV	nucleus	left and right	aal3
	Lateral posterior nucleus	LP	nucleus	left and right	aal3
	Ventral anterior nucleus	VA	nucleus	left and right	aal3
	Ventral lateral nucleus	VL	nucleus	left and right	aal3
	Ventral posterolateral nucleus	VPL	nucleus	left and right	aal3
	Intralaminar nuclei	IL	nucleus	left and right	aal3
	Reuniens nucleus	Re	nucleus	left and right	aal3
	Mediodorsal nucleus, medial magnocellular part	MDm	nucleus	left and right	aal3
	Mediodorsal nucleus, lateral parvocellular part	MDl	nucleus	left and right	aal3
	Lateral geniculate nucleus	LGN	nucleus	left and right	aal3
	Medial geniculate nucleus	MGN	nucleus	left and right	aal3
	Inferior pulvinar	PuI	nucleus	left and right	aal3
	Medial pulvinar	PuM	nucleus	left and right	aal3
	Anterior pulvinar	PuA	nucleus	left and right	aal3
	Lateral pulvinar	PuL	nucleus	left and right	aal3

Hypothalamus

	Name	Acronym	Kind	Sides	Source
	Medial preoptic nucleus	MPO	nucleus	left and right	neudorfer2020
	Paraventricular nucleus	Pa	nucleus	left and right	neudorfer2020
	Dorsal periventricular hypothalamic nucleus	DPEH	nucleus	left and right	neudorfer2020
	Periventricular hypothalamic nucleus	Pe	nucleus	left and right	neudorfer2020
	Lateral hypothalamus	LH	region	left and right	neudorfer2020
	Ventromedial hypothalamic nucleus	VMH	nucleus	left and right	neudorfer2020
	Dorsomedial hypothalamic nucleus	DMH	nucleus	left and right	neudorfer2020
	Arcuate nucleus	ARC	nucleus	left and right	neudorfer2020
	Supraoptic nucleus	SON	nucleus	left and right	neudorfer2020
	Suprachiasmatic nucleus	SCN	nucleus	left and right	neudorfer2020
	Tuberomammillary nucleus	TMN	nucleus	left and right	neudorfer2020
	Posterior hypothalamic nucleus	PH	nucleus	left and right	neudorfer2020
	Anterior hypothalamic area	AHA	region	left and right	neudorfer2020
	Mammillary body	MMB	nucleus	left and right	neudorfer2020

Subthalamus

	Name	Acronym	Kind	Sides	Source
	Subthalamic nucleus	STN	nucleus	left and right	neudorfer2020
	Zona incerta	ZI	region	left and right	neudorfer2020

Epithalamus

	Name	Acronym	Kind	Sides	Source
	Pineal gland	PIN	region	midline	razavi2021

Brainstem

Midbrain

	Name	Acronym	Kind	Sides	Source
	Ventral tegmental area	VTA	nucleus	left and right	aal3
	Red nucleus	RN	nucleus	left and right	aal3
	Periaqueductal grey	PAG	nucleus	midline	edlow2023
	Inferior colliculus	IC	nucleus	left and right	sitek2019
	Midbrain reticular formation	mRt	nucleus	left and right	edlow2023
	Pedunculopontine nucleus	PPN	nucleus	left and right	edlow2023
	Superior colliculus	SC	nucleus	left and right	bianciardi2024
	Cuneiform nucleus	CnF	nucleus	left and right	bianciardi2024

Substantia nigra

	Name	Acronym	Kind	Sides	Source
	Substantia nigra, pars compacta	SNc	nucleus	left and right	aal3
	Substantia nigra, pars reticulata	SNr	nucleus	left and right	aal3

Pons

	Name	Acronym	Kind	Sides	Source
	Locus coeruleus	LC	nucleus	left and right	aal3
	Laterodorsal tegmental nucleus	LDT	nucleus	left and right	edlow2023
	Parabrachial complex	PB	nucleus	left and right	edlow2023
	Pontine reticular nucleus, oral part	PnO	nucleus	left and right	edlow2023
	Superior olivary complex	SOC	nucleus	left and right	sitek2019
	Subcoeruleus	SubC	nucleus	left and right	bianciardi2024

Raphe nuclei

	Name	Acronym	Kind	Sides	Source
	Dorsal raphe nucleus	DR	nucleus	midline	aal3
	Median raphe nucleus	MnR	nucleus	midline	aal3
	Raphe obscurus	ROb	nucleus	midline	bianciardi2024
	Raphe pallidus	RPa	nucleus	midline	bianciardi2024

Medulla

	Name	Acronym	Kind	Sides	Source
	Cochlear nuclei	Coch	nucleus	left and right	sitek2019
	Inferior olive	ION	nucleus	left and right	bianciardi2024
	Vestibular nuclei	Ve	nucleus	left and right	bianciardi2024
	Viscero-sensory-motor nuclei (solitary tract and dorsal vagal nuclei)	VSM	nucleus	left and right	bianciardi2024
	Superior medullary reticular formation	sMRt	nucleus	left and right	bianciardi2024
	Inferior medullary reticular formation	iMRt	nucleus	left and right	bianciardi2024

Cerebellum

Cerebellar hemispheres

	Name	Acronym	Kind	Sides	Source
	Cerebellar crus I	CrusI	region	left and right	aal3
	Cerebellar crus II	CrusII	region	left and right	aal3
	Cerebellar lobule III	CbIII	region	left and right	aal3
	Cerebellar lobules IV-V	CbIV-V	region	left and right	aal3
	Cerebellar lobule VI	CbVI	region	left and right	aal3
	Cerebellar lobule VIIb	CbVIIb	region	left and right	aal3
	Cerebellar lobule VIII	CbVIII	region	left and right	aal3
	Cerebellar lobule IX	CbIX	region	left and right	aal3
	Cerebellar lobule X	CbX	region	left and right	aal3

Vermis

	Name	Acronym	Kind	Sides	Source
	Vermis lobules I-II	VerI-II	region	midline	aal3
	Vermis lobule III	VerIII	region	midline	aal3
	Vermis lobules IV-V	VerIV-V	region	midline	aal3
	Vermis lobule VI	VerVI	region	midline	aal3
	Vermis lobule VII	VerVII	region	midline	aal3
	Vermis lobule VIII	VerVIII	region	midline	aal3
	Vermis lobule IX	VerIX	region	midline	aal3
	Vermis lobule X	VerX	region	midline	aal3

Deep cerebellar nuclei

	Name	Acronym	Kind	Sides	Source
	Dentate nucleus	Dn	nucleus	left and right	diedrichsen2009
	Interposed nucleus	Int	nucleus	left and right	diedrichsen2009

Tracts

Projection tracts

	Name	Acronym	Kind	Sides	Source
	Corticospinal tract	CST	tract	left and right	hcp1065
	Frontopontine tract	FPT	tract	left and right	hcp1065
	Parietopontine tract	PPT	tract	left and right	hcp1065
	Occipitopontine tract	OPT	tract	left and right	hcp1065
	Temporopontine tract	TPT	tract	left and right	hcp1065
	Corticostriatal pathway	CSP	tract	left and right	hcp1065
	Corticothalamic pathway	CTP	tract	left and right	hcp1065

Association tracts

	Name	Acronym	Kind	Sides	Source
	Arcuate fasciculus	AF	tract	left and right	hcp1065
	Superior longitudinal fasciculus	SLF	tract	left and right	hcp1065
	Middle longitudinal fasciculus	MdLF	tract	left and right	hcp1065
	Inferior longitudinal fasciculus	ILF	tract	left and right	hcp1065
	Inferior fronto-occipital fasciculus	IFOF	tract	left and right	hcp1065
	Uncinate fasciculus	UNC	tract	left and right	hcp1065
	Cingulum	CING	tract	left and right	hcp1065
	Extreme capsule	EMC	tract	left and right	hcp1065
	Frontal aslant tract	FAT	tract	left and right	hcp1065
	Vertical occipital fasciculus	VOF	tract	left and right	hcp1065
	U-fibres	UFIB	tract	left and right	hcp1065

Commissural tracts

	Name	Acronym	Kind	Sides	Source
	Corpus callosum	CC	tract	midline	hcp1065
	Anterior commissure	AC	tract	midline	hcp1065
	Posterior commissure	PC	tract	midline	hcp1065

Brainstem tracts

	Name	Acronym	Kind	Sides	Source
	Medial lemniscus	ML	tract	left and right	hcp1065
	Lateral lemniscus	LLEM	tract	left and right	hcp1065
	Spinothalamic tract	STT	tract	left and right	hcp1065
	Central tegmental tract	CTT	tract	left and right	hcp1065
	Medial longitudinal fasciculus	MLF	tract	left and right	hcp1065
	Dorsal longitudinal fasciculus	DLF	tract	left and right	hcp1065
	Rubrospinal tract	RST	tract	left and right	hcp1065

Cerebellar peduncles

	Name	Acronym	Kind	Sides	Source
	Inferior cerebellar peduncle	ICP	tract	left and right	hcp1065
	Middle cerebellar peduncle	MCP	tract	midline	hcp1065
	Superior cerebellar peduncle	SCP	tract	midline	hcp1065

Limbic and diencephalic tracts

	Name	Acronym	Kind	Sides	Source
	Mammillothalamic tract	MTT	tract	left and right	neudorfer2020
	Inferior thalamic peduncle	ITP	tract	left and right	neudorfer2020
	Fornix	FX	tract	left and right	hcp1065

Radiations

	Name	Acronym	Kind	Sides	Source
	Optic radiation	OR	tract	left and right	hcp1065
	Acoustic radiation	AR	tract	left and right	hcp1065

Cranial nerves

	Name	Acronym	Kind	Sides	Source
	Optic nerve	CNII	tract	left and right	hcp1065
	Oculomotor nerve	CNIII	tract	left and right	hcp1065
	Trochlear nerve	CNIV	tract	left and right	hcp1065
	Trigeminal nerve	CNV	tract	left and right	hcp1065
	Facial nerve	CNVII	tract	left and right	hcp1065
	Vestibulocochlear nerve	CNVIII	tract	left and right	hcp1065
	Vagus nerve	CNX	tract	left and right	hcp1065